<html><body><title>AT3G12640.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321264001000i/AT3G12640.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321264001000i/AT3G12640.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321264001000i/AT3G12640.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320681001000i">AT3G06810.1</a></td><td>0.916602</td><td>IBR3 (IBA-RESPONSE 3)</td><td>OMAT3P002420</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223888002000i">AT2G38880.2</a></td><td>0.895557</td><td>NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120391001000i">AT1G03910.1</a></td><td>0.885561</td><td>EXPRESSED IN: 25 plant structures</td><td>OMAT1P001200</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420332001000i">AT4G03320.1</a></td><td>0.880575</td><td>tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)</td><td>OMAT4P001300</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223767001000i">AT2G37670.1</a></td><td>0.875922</td><td>WD-40 repeat family protein</td><td>OMAT2P108880</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525104001000i">AT5G51040.1</a></td><td>0.865839</td><td>unknown protein</td><td>OMAT5P014600</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224350001000i">AT2G43500.1</a></td><td>0.865778</td><td>RWP-RK domain-containing protein</td><td>OMAT2P011930</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220128001000i">AT2G01280.1</a></td><td>0.86424</td><td>MEE65 (maternal effect embryo arrest 65)</td><td>-</td><td>-</td><td>OMAT2P100110</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221824001000i">AT2G18240.1</a></td><td>0.86178</td><td>RER1 protein, putative</td><td>OMAT2P002850</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423742001000i">AT4G37420.1</a></td><td>0.857833</td><td>unknown protein</td><td>OMAT4P012950</td><td>-</td><td>OMAT4P111330</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321341001000i">AT3G13410.1</a></td><td>-0.858676</td><td>unknown protein</td><td>OMAT3P104460</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222796001000i">AT2G27960.1</a></td><td>-0.845478</td><td>CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)</td><td>OMAT2P105540</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220652001000i">AT2G06520.1</a></td><td>-0.842059</td><td>PSBX (photosystem II subunit X)</td><td>OMAT2P101275</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125043001000i">AT1G50430.1</a></td><td>-0.822247</td><td>DWF5 (DWARF 5)</td><td>OMAT1P112310</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224259003000i">AT2G42590.3</a></td><td>-0.81909</td><td>GRF9 (GENERAL REGULATORY FACTOR 9)</td><td>OMAT2P110855</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422686001000i">AT4G26860.1</a></td><td>-0.818334</td><td>pyridoxal phosphate binding</td><td>OMAT4P107380</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222093001000i">AT2G20930.1</a></td><td>-0.816734</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126095001000i">AT1G60950.1</a></td><td>-0.815304</td><td>FED A</td><td>OMAT1P016540</td><td>-</td><td>OMAT1P114790</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325605001000i">AT3G56050.1</a></td><td>-0.81518</td><td>protein kinase family protein</td><td>OMAT3P113620</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526404002000i">AT5G64040.2</a></td><td>-0.814544</td><td>PSAN</td><td>OMAT5P117410</td><td>-</td><td>OMAT5P019670</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321264001000i/AT3G12640.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>42/200</td><td>1.44</td><td>5.12e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>regulator</td><td>-</td><td>10/200</td><td>3.42</td><td>1.90e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>10/200</td><td>2.49</td><td>2.50e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT3G12640.1
with_OMAT_gene
0.60575500000000004341